Make Database Input File

This function outputs a file consisting entirely of gene names, each produced on a new line. This data can be copy and pasted into a database input in order to get protein-protein interaction data.

Usage

MakeDBInput(gene.cccn.nodes, file.path.name = "db_nodes.txt")

Arguments

gene.cccn.nodes

A list of nodes that are in the Gene CoCluster Correlation Network derived from common clusters between the three distance metrics (Euclidean, Spearman, and Combined (SED))

file.path.name

Path for the output file; defaults to db_nodes.txt

Value

A file with all of the gene names which can be copy and pasted into the GeneMania cytoscape app, data frame of the names of the genes

Examples

#MakeDBInput(ex.nodenames)
cat(ex.nodenames[[1]], sep = '\n')
#> Error: object 'ex.nodenames' not found