Format Kinsub Table

Include kinase substrate dataset from PhosphoSitePlus https://www.phosphosite.org/staticDownloads

Usage

GetKinsub.edges(
  kinasesubstrate.filename = "Kinase_Substrate_Dataset.txt",
  gene.cccn.nodes
)

Arguments

kinasesubstrate.filename

The path to the kinase substrate database file from https://www.phosphosite.org/staticDownloads

gene.cccn.nodes

A list of nodes that are in the Gene CoCluster Correlation Network derived from common clusters between the three distance metrics (Euclidean, Spearman, and Combined (SED))

Value

An edgelist filtered by the gene cccn and nodenames