Creates a Cytoscape network from a Pathway Crosstalk Network (PCN) data frame,
applying edge color and width mappings. Requires Cytoscape to be open and
RCy3 to be installed.
Usage
cytoscape.graph.PCN.pathways(PCN, net.name, Jaccard.edges = TRUE)
Arguments
- PCN
A data frame representing the pathway crosstalk network with columns
source, target, interaction, and Weight.
- net.name
A character string used as the base network title in Cytoscape.
- Jaccard.edges
Logical; if FALSE, pathway Jaccard similarity edges
are removed before plotting. Defaults to TRUE.
Value
Called for its side effects; creates a network in Cytoscape.
