Summarise PTM table data to gene level

Subsets a PTM table to genes of interest and collapses PTM-level numeric values to gene-level sums, suitable for loading into Cytoscape node attributes.

Usage

make.gene.data.from.ptmtable(genes, ptmtable)

Arguments

genes

Character vector of gene names to retain.

ptmtable

A PTM data frame with PTM identifiers ("GENE site") as row names and numeric drug/condition columns.

Value

A data frame with one row per gene and summed numeric columns.